Fix warnings in documentation

This commit resolves all warnings in the project documentation

Signed-off-by: Robert Winkler <rwinkler@antmicro.com>

docs/architecture/interconnect.rst

@@ -17,7 +17,7 @@ Regular :term:`PIPs <pip>` correspond to a bit pattern that is present in the bi
 
 .. warning:: FIXME: Check if the above is true for PIPs outside of the INT switch box.
 
-For example, when the bits 05_57 and 11_56 are set then SR1END3->SE2BEG3 is enabled, but when 08_56 and 11_56 are set then ER1END3->SE2BEG3 is enabled (in an :term:`INT_L <INT>`s tile paired with a CLBLL_L tile). A configuration in which all three bits are set is invalid. See `segbits_int_[lr].db` for a complete list of bit pattern for configuring :term:`PIPs <pip>`.
+For example, when the bits 05_57 and 11_56 are set then SR1END3->SE2BEG3 is enabled, but when 08_56 and 11_56 are set then ER1END3->SE2BEG3 is enabled (in an :term:`INT_L <INT>` tile paired with a CLBLL_L tile). A configuration in which all three bits are set is invalid. See `segbits_int_[lr].db` for a complete list of bit pattern for configuring :term:`PIPs <pip>`.
 
 VCC Drivers
 -----------

docs/conf.py

@@ -35,6 +35,8 @@ from markdown_code_symlinks import LinkParser, MarkdownSymlinksDomain
 # Add any Sphinx extension module names here, as strings. They can be
 # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
 # ones.
+
+# yapf: disable
 extensions = [
     'sphinx.ext.autodoc',
     'sphinx.ext.autosummary',
@@ -42,8 +44,9 @@ extensions = [
     'sphinx.ext.imgmath',
     'sphinx.ext.napoleon',
     'sphinx.ext.todo',
-    'sphinx_markdown_tables',
+    'sphinx_markdown_tables'
 ]
+# yapf: enable
 
 # Add any paths that contain templates here, relative to this directory.
 templates_path = ['_templates']
@@ -100,7 +103,15 @@ language = None
 # List of patterns, relative to source directory, that match files and
 # directories to ignore when looking for source files.
 # This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
+
+# yapf: disable
+exclude_patterns = [
+    '_build',
+    'architecture/copying.md',
+    'db_dev_process/minitests/index/**',
+    'db_dev_process/fuzzers/index/**'
+]
+# yapf: enable
 
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = 'default'

docs/db_dev_process/fuzzers/index.rst

@@ -57,7 +57,6 @@ Programmable Interconnect Points (PIPs)
    :maxdepth: 1
    :glob:
 
-   *int*
    *pip*
 
 Hard Block Fuzzers
@@ -67,7 +66,7 @@ Hard Block Fuzzers
    :maxdepth: 1
    :glob:
 
-   *xadc
+   *xadc*
 
 Grid and Wire
 -------------
@@ -77,19 +76,6 @@ Grid and Wire
    :glob:
 
    tilegrid
-   tileconn
-   ordered_wires
-   get_counts
-   dump_all
-
-Timing
-------
-
-.. toctree::
-   :maxdepth: 1
-   :glob:
-
-   timing
 
 All Fuzzers
 -----------

docs/db_dev_process/minitests/index.rst

@@ -7,22 +7,4 @@ Minitests are experiments to figure out how things work. They allow us to unders
    :maxdepth: 1
    :glob:
 
-   clb-bused
-   clb-carry_cin_cyinit
-   clb-configs
-   clb-muxf8
-   clkbuf
-   eccbits
-   fixedpnr
-   litex
-   lvb_long_mux
-   nodes_wires_list
-   partial_reconfig_flow
-   picorv32-v
-   picorv32-y
-   pip-switchboxes
-   roi_harness
-   srl
-   tiles_wires_pips
-   timing
-   util
+   *

docs/index.rst

@@ -26,7 +26,6 @@ to develop a free and open Verilog to bitstream toolchain for these devices.
    architecture/reference
    architecture/code_of_conduct
    architecture/updating_the_docs
-   architecture/copying
 
 .. toctree::
    :maxdepth: 2

fuzzers/038-cfg/README.md

@@ -1,3 +1,5 @@
+# cfg fuzzer
+
 This fuzzer solves some of the bits in the CFG_CENTER_MID tile
 The tile contains sites of the following types: BSCAN, USR_ACCESS, CAPTURE, STARTUP, FRAME_ECC, DCIRESET and ICAP.
 DCIRESET and USR_ACCESS don't really have any parameters.