Deduplicate executable jar package entries. In the issue, the duplicate was something like:
(resource_managed/.../sbt/sbt.autoplugins, "sbt/sbt.autoplugins")
(classes/.../sbt/sbt.autoplugins, "sbt/sbt.autoplugins")
This is because copyResources copied autoplugin metadata to the classes directory.
Solution: when composing the packageBinMappings, differentiate between artifacts that come from class directory and from outside of it. If there is a duplicate, prefer resource that comes from outside of it.
Co-authored-by: Anatolii Kmetiuk <anatoliykmetyuk@gmail.com>