186 lines
4.8 KiB
C
186 lines
4.8 KiB
C
/* ========================================================================= */
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/* === AMD_aat ============================================================= */
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/* ========================================================================= */
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/* ------------------------------------------------------------------------- */
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/* AMD, Copyright (c) Timothy A. Davis, */
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/* Patrick R. Amestoy, and Iain S. Duff. See ../README.txt for License. */
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/* email: davis at cise.ufl.edu CISE Department, Univ. of Florida. */
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/* web: http://www.cise.ufl.edu/research/sparse/amd */
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/* ------------------------------------------------------------------------- */
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/* AMD_aat: compute the symmetry of the pattern of A, and count the number of
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* nonzeros each column of A+A' (excluding the diagonal). Assumes the input
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* matrix has no errors, with sorted columns and no duplicates
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* (AMD_valid (n, n, Ap, Ai) must be AMD_OK, but this condition is not
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* checked).
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*/
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#include "amd_internal.h"
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GLOBAL size_t AMD_aat /* returns nz in A+A' */
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(
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Int n,
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const Int Ap [ ],
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const Int Ai [ ],
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Int Len [ ], /* Len [j]: length of column j of A+A', excl diagonal*/
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Int Tp [ ], /* workspace of size n */
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double Info [ ]
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)
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{
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Int p1, p2, p, i, j, pj, pj2, k, nzdiag, nzboth, nz ;
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double sym ;
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size_t nzaat ;
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#ifndef NDEBUG
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AMD_debug_init ("AMD AAT") ;
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for (k = 0 ; k < n ; k++) Tp [k] = EMPTY ;
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ASSERT (AMD_valid (n, n, Ap, Ai) == AMD_OK) ;
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#endif
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if (Info != (double *) NULL)
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{
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/* clear the Info array, if it exists */
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for (i = 0 ; i < AMD_INFO ; i++)
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{
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Info [i] = EMPTY ;
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}
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Info [AMD_STATUS] = AMD_OK ;
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}
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for (k = 0 ; k < n ; k++)
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{
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Len [k] = 0 ;
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}
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nzdiag = 0 ;
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nzboth = 0 ;
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nz = Ap [n] ;
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for (k = 0 ; k < n ; k++)
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{
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p1 = Ap [k] ;
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p2 = Ap [k+1] ;
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AMD_DEBUG2 (("\nAAT Column: "ID" p1: "ID" p2: "ID"\n", k, p1, p2)) ;
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/* construct A+A' */
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for (p = p1 ; p < p2 ; )
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{
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/* scan the upper triangular part of A */
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j = Ai [p] ;
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if (j < k)
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{
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/* entry A (j,k) is in the strictly upper triangular part,
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* add both A (j,k) and A (k,j) to the matrix A+A' */
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Len [j]++ ;
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Len [k]++ ;
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AMD_DEBUG3 ((" upper ("ID","ID") ("ID","ID")\n", j,k, k,j));
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p++ ;
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}
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else if (j == k)
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{
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/* skip the diagonal */
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p++ ;
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nzdiag++ ;
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break ;
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}
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else /* j > k */
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{
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/* first entry below the diagonal */
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break ;
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}
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/* scan lower triangular part of A, in column j until reaching
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* row k. Start where last scan left off. */
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ASSERT (Tp [j] != EMPTY) ;
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ASSERT (Ap [j] <= Tp [j] && Tp [j] <= Ap [j+1]) ;
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pj2 = Ap [j+1] ;
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for (pj = Tp [j] ; pj < pj2 ; )
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{
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i = Ai [pj] ;
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if (i < k)
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{
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/* A (i,j) is only in the lower part, not in upper.
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* add both A (i,j) and A (j,i) to the matrix A+A' */
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Len [i]++ ;
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Len [j]++ ;
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AMD_DEBUG3 ((" lower ("ID","ID") ("ID","ID")\n",
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i,j, j,i)) ;
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pj++ ;
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}
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else if (i == k)
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{
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/* entry A (k,j) in lower part and A (j,k) in upper */
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pj++ ;
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nzboth++ ;
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break ;
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}
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else /* i > k */
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{
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/* consider this entry later, when k advances to i */
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break ;
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}
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}
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Tp [j] = pj ;
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}
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/* Tp [k] points to the entry just below the diagonal in column k */
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Tp [k] = p ;
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}
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/* clean up, for remaining mismatched entries */
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for (j = 0 ; j < n ; j++)
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{
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for (pj = Tp [j] ; pj < Ap [j+1] ; pj++)
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{
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i = Ai [pj] ;
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/* A (i,j) is only in the lower part, not in upper.
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* add both A (i,j) and A (j,i) to the matrix A+A' */
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Len [i]++ ;
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Len [j]++ ;
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AMD_DEBUG3 ((" lower cleanup ("ID","ID") ("ID","ID")\n",
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i,j, j,i)) ;
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}
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}
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/* --------------------------------------------------------------------- */
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/* compute the symmetry of the nonzero pattern of A */
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/* --------------------------------------------------------------------- */
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/* Given a matrix A, the symmetry of A is:
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* B = tril (spones (A), -1) + triu (spones (A), 1) ;
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* sym = nnz (B & B') / nnz (B) ;
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* or 1 if nnz (B) is zero.
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*/
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if (nz == nzdiag)
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{
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sym = 1 ;
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}
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else
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{
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sym = (2 * (double) nzboth) / ((double) (nz - nzdiag)) ;
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}
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nzaat = 0 ;
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for (k = 0 ; k < n ; k++)
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{
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nzaat += Len [k] ;
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}
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AMD_DEBUG1 (("AMD nz in A+A', excluding diagonal (nzaat) = %g\n",
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(double) nzaat)) ;
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AMD_DEBUG1 ((" nzboth: "ID" nz: "ID" nzdiag: "ID" symmetry: %g\n",
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nzboth, nz, nzdiag, sym)) ;
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if (Info != (double *) NULL)
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{
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Info [AMD_STATUS] = AMD_OK ;
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Info [AMD_N] = n ;
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Info [AMD_NZ] = nz ;
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Info [AMD_SYMMETRY] = sym ; /* symmetry of pattern of A */
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Info [AMD_NZDIAG] = nzdiag ; /* nonzeros on diagonal of A */
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Info [AMD_NZ_A_PLUS_AT] = nzaat ; /* nonzeros in A+A' */
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}
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return (nzaat) ;
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}
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