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library has been read in with the "gds readonly true" option set because the cell contains information on where in the GDS the cell is located, but the cell is empty because it was flattened into the magic view and all of its contents were erased. This can cause issues with LVS if magic generates an empty cell into the netlist and the LVS tool tries to compare the cells by name. Also, this prevents unnecessary .ext files and unnecessary merges to the substrate of such cells (since all cells have an implied substrate).