fact that "extract all" does not enumerate cells from bottom up
as I had assumed---The order is roughly bottom-to-top, but cells
re-used in different places in the hierarchy could end up called
before one or more of their own subcells is extracted. Since
this conflicted with the preparation of the substrate in each
extracted subcircuit, I changed the method to enumerate cells so
that it is properly bottom-to-top. Also, methods were added to
"extract" (incremental), "extract cell", and "extract parents"
to ensure that the substrate is prepared on all subcells before
extraction.