build: generate near-standard + outlier Makefiles from Makefile.in (rename unit)

Third batch of the Makefile.in migration: near-standard modules
(utils windows commands database) and the program/.so outliers
(lef plot router ext2spice ext2sim extcheck net2ir graphics oa).
Pure renames -- content unchanged, so each still builds via the defs.mak
srcdir derivation; the @srcdir@ substitution follows.

* git mv <dir>/Makefile -> <dir>/Makefile.in (13 modules)
* configure.in: AC_CONFIG_FILES for each; regenerated configure.
* .gitignore: ignore each generated <dir>/Makefile, same commit.

These modules carry sibling-object refs (${MAGICDIR}/<mod>/lib*.o) and
custom rules; those keep working unchanged (${MAGICDIR} = the build top,
$(srcdir) from the derivation).  readline/ remains on the -f path.

Verified out-of-tree: config.status writes 35 module Makefiles (22 + 13);
`make modules libs` builds all 33 module libraries (rc=0).

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

.gitignore

@@ -42,6 +42,19 @@ select/Makefile
 sim/Makefile
 textio/Makefile
 wiring/Makefile
+utils/Makefile
+windows/Makefile
+commands/Makefile
+database/Makefile
+lef/Makefile
+plot/Makefile
+router/Makefile
+ext2spice/Makefile
+ext2sim/Makefile
+extcheck/Makefile
+net2ir/Makefile
+graphics/Makefile
+oa/Makefile
 
 # Compiled objects / libraries
 *.o

scripts/configure

@@ -9443,6 +9443,32 @@ ac_config_files="$ac_config_files textio/Makefile:textio/Makefile.in"
 
 ac_config_files="$ac_config_files wiring/Makefile:wiring/Makefile.in"
 
+ac_config_files="$ac_config_files utils/Makefile:utils/Makefile.in"
+
+ac_config_files="$ac_config_files windows/Makefile:windows/Makefile.in"
+
+ac_config_files="$ac_config_files commands/Makefile:commands/Makefile.in"
+
+ac_config_files="$ac_config_files database/Makefile:database/Makefile.in"
+
+ac_config_files="$ac_config_files lef/Makefile:lef/Makefile.in"
+
+ac_config_files="$ac_config_files plot/Makefile:plot/Makefile.in"
+
+ac_config_files="$ac_config_files router/Makefile:router/Makefile.in"
+
+ac_config_files="$ac_config_files ext2spice/Makefile:ext2spice/Makefile.in"
+
+ac_config_files="$ac_config_files ext2sim/Makefile:ext2sim/Makefile.in"
+
+ac_config_files="$ac_config_files extcheck/Makefile:extcheck/Makefile.in"
+
+ac_config_files="$ac_config_files net2ir/Makefile:net2ir/Makefile.in"
+
+ac_config_files="$ac_config_files graphics/Makefile:graphics/Makefile.in"
+
+ac_config_files="$ac_config_files oa/Makefile:oa/Makefile.in"
+
 
 if test "`cd $srcdir && pwd`" = "`pwd`" ; then
   magic_config_header=magic/autoconf/config.h
@@ -10194,6 +10220,19 @@ do
     "sim/Makefile") CONFIG_FILES="$CONFIG_FILES sim/Makefile:sim/Makefile.in" ;;
     "textio/Makefile") CONFIG_FILES="$CONFIG_FILES textio/Makefile:textio/Makefile.in" ;;
     "wiring/Makefile") CONFIG_FILES="$CONFIG_FILES wiring/Makefile:wiring/Makefile.in" ;;
+    "utils/Makefile") CONFIG_FILES="$CONFIG_FILES utils/Makefile:utils/Makefile.in" ;;
+    "windows/Makefile") CONFIG_FILES="$CONFIG_FILES windows/Makefile:windows/Makefile.in" ;;
+    "commands/Makefile") CONFIG_FILES="$CONFIG_FILES commands/Makefile:commands/Makefile.in" ;;
+    "database/Makefile") CONFIG_FILES="$CONFIG_FILES database/Makefile:database/Makefile.in" ;;
+    "lef/Makefile") CONFIG_FILES="$CONFIG_FILES lef/Makefile:lef/Makefile.in" ;;
+    "plot/Makefile") CONFIG_FILES="$CONFIG_FILES plot/Makefile:plot/Makefile.in" ;;
+    "router/Makefile") CONFIG_FILES="$CONFIG_FILES router/Makefile:router/Makefile.in" ;;
+    "ext2spice/Makefile") CONFIG_FILES="$CONFIG_FILES ext2spice/Makefile:ext2spice/Makefile.in" ;;
+    "ext2sim/Makefile") CONFIG_FILES="$CONFIG_FILES ext2sim/Makefile:ext2sim/Makefile.in" ;;
+    "extcheck/Makefile") CONFIG_FILES="$CONFIG_FILES extcheck/Makefile:extcheck/Makefile.in" ;;
+    "net2ir/Makefile") CONFIG_FILES="$CONFIG_FILES net2ir/Makefile:net2ir/Makefile.in" ;;
+    "graphics/Makefile") CONFIG_FILES="$CONFIG_FILES graphics/Makefile:graphics/Makefile.in" ;;
+    "oa/Makefile") CONFIG_FILES="$CONFIG_FILES oa/Makefile:oa/Makefile.in" ;;
 
   *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
   esac

scripts/configure.in

@@ -2027,6 +2027,19 @@ AC_CONFIG_FILES([select/Makefile:select/Makefile.in])
 AC_CONFIG_FILES([sim/Makefile:sim/Makefile.in])
 AC_CONFIG_FILES([textio/Makefile:textio/Makefile.in])
 AC_CONFIG_FILES([wiring/Makefile:wiring/Makefile.in])
+AC_CONFIG_FILES([utils/Makefile:utils/Makefile.in])
+AC_CONFIG_FILES([windows/Makefile:windows/Makefile.in])
+AC_CONFIG_FILES([commands/Makefile:commands/Makefile.in])
+AC_CONFIG_FILES([database/Makefile:database/Makefile.in])
+AC_CONFIG_FILES([lef/Makefile:lef/Makefile.in])
+AC_CONFIG_FILES([plot/Makefile:plot/Makefile.in])
+AC_CONFIG_FILES([router/Makefile:router/Makefile.in])
+AC_CONFIG_FILES([ext2spice/Makefile:ext2spice/Makefile.in])
+AC_CONFIG_FILES([ext2sim/Makefile:ext2sim/Makefile.in])
+AC_CONFIG_FILES([extcheck/Makefile:extcheck/Makefile.in])
+AC_CONFIG_FILES([net2ir/Makefile:net2ir/Makefile.in])
+AC_CONFIG_FILES([graphics/Makefile:graphics/Makefile.in])
+AC_CONFIG_FILES([oa/Makefile:oa/Makefile.in])
 
 dnl Emit an autoconf config header, available to the tree as
 dnl   #include <magic/autoconf/config.h>