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* First attempt to fix. Rather experimental. * Debugging and bug fixing The basic issue was a missing break However, correct computation of cache results for instance-to-instance cluster interaction is implemented Plus: identical and overlapping instances are no longer ignored except in the case of exact duplicates. Otherwise these instance generate dead nets which are not connected elsewhere. * Added tests, fixed duplicate cells test, added missing files. * Code simplification (removed invariant from transformation in cluster-to-cluster interaction cache) * Skipping cell instance duplicates as some real-world testcases mandate so * Updated test data