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Found rotate bug in transformCoordinate. Cleaned up transFlags.
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@@ -56,6 +56,7 @@ layer["via9"] = 28
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layer["metal10"] = 29
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layer["text"] = 239
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layer["boundary"]= 239
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layer["blockage"]= 239
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###################################################
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##END GDS Layer Map
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@@ -41,6 +41,7 @@ layer["via2"] = 61
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layer["metal3"] = 62
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layer["text"] = 63
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layer["boundary"] = 63
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layer["blockage"] = 83
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###################################################
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##END GDS Layer Map
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