diff --git a/docs/architecture/glossary.rst b/docs/architecture/glossary.rst
index ef29cec2..dec0ece5 100644
--- a/docs/architecture/glossary.rst
+++ b/docs/architecture/glossary.rst
@@ -3,70 +3,132 @@ Glossary
.. glossary::
- basic element
BEL
- basic logic element
BLE
- For example a LUT5, LUT6, CARRY4, or MUX, but not PIPs.
+ Basic element (BEL) or basic logic element (BLE)
+ BELs or BLEs are the basic logic elements in an FPGA, including
+ carry or fast adders (CFAs), flip flops (FFs), lookup tables (LUTs),
+ multiplexers (MUXes), and other element types.
+ Note: Programmable interconnects (PIPs) are not counted as BELs.
- BELs come in two types:
+ BELs come in two forms:
* Basic BEL - A logic unit which does things.
- * Routing BEL - A unit which is statically configured at the routing time.
+ * Routing BEL - A unit which is statically configured at routing time.
- bitstream
+ Bitstream
Binary data that is directly loaded into an FPGA to perform configuration.
Contains configuration :term:`frames ` as well as programming
sequences and other commands required to load and activate same.
- clock domain
+ Clock domain
Portion of a :term:`horizontal clock row` to one side of the global clock
spine. Often refers to :term:`tiles ` that are associated with these
clocks.
- column
- Collection of :term:`tiles ` physically organized as a vertical line.
+ Column
+ A term used in :term:`bitstream` configuration to denote
+ a collection of :term:`tiles `, physically organized as
+ a vertical line, and configured by the same set of configuration frames.
+ Logic columns span 50 tiles vertically and 2 tiles horizontally
+ (pairs of logic tiles and interconnect tiles).
- configurable logic block
CLB
- Basic building block of logic.
+ Configurable logic block (CLB)
+ The configurable logic unit of an FPGA. Also called a **logic cell**.
+ A CLB is a combination of basic logic elements (:term:`BELs `).
- frame
- Fundamental unit of configuration data consisting of 101 :term:`words `.
+ Database
+ A term used in *Project X-Ray* to denote
+ text files containing meaningful labels for bit positions within
+ :term:`segments `.
- half
+ Frame
+ The fundamental unit of :term:`bitstream` configuration data consisting of
+ 101 :term:`words `.
+ Each frame has a 32-bit frame address and 101 payload words, 32 bits each.
+ The 50th payload words is an EEC.
+ The 7 LSB bits of the frame address are the frame index within the
+ configuration :term:`column` (called *minor frame address* in the Xilinx
+ documentation). The rest of the frame address identifies the configuration
+ column (called *base frame address* in Project X-Ray nomenclature).
+
+ The bits in an individual frame are spread out over the entire column.
+ For example, in a logic column with 50 tiles, the first tile is configured
+ with the first two words in each frame, the next tile with the next two
+ words, and so on.
+
+ Frame base address
+ The first configuration frame address for a :term:`column`. A frame base
+ address has always the 7 LSB bits cleared.
+
+ Fuzzer
+ Scripts and a makefile to generate one or more :term:`specimens `
+ and then convert the data from those specimens into a :term:`database`.
+
+ Half
Portion of a device defined by a virtual line dividing the two sets of global
- clock buffers present in a device. The two halves are simply referred to as
+ clock buffers present in a device. The two halves are referred to as
the top and bottom halves.
- node
- Collection of :term:`wires ` spanning one or more tiles.
+ Node
+ A routing node on the device. A node is a collection of :term:`wires `
+ spanning one or more "tiles"term" `tiles `.
+ Nodes that are local to a tile map 1:1 to a wire. A node that spans multiple
+ tiles maps to multiple wires, one in each tile it spans.
- programmable interconnect point
PIP
+ Programmable interconnect point (PIP)
Connection point between two wires in a tile that may be enabled or
disabled by the configuration.
- horizontal clock row
+ Horizontal clock row
Portion of a device including 12 horizontal clocks and the 50 interconnect
and function tiles associated with them. A :term:`half` contains one or
more horizontal clock rows and each half may have a different number of
rows.
+
+ ROI
+ Region of interest (ROI)
+ A term used in *Project X-Ray* to denote a
+ rectangular region on the FPGA that is the current focus of our study.
+ Right now this is `SLICE_X12Y100:SLICE_X27Y149` on a `xc7a50tfgg484-1`
+ chip.
- site
- Portion of a tile where :term:`BELs ` can be placed. :term:`Slices
- ` in a :term:`CLB` tile are sites.
+ Segment
+ All configuration bits for a horizontal slice of a :term:`column`.
+ This corresponds to two ranges: a range of :term:`frames `
+ and a range of :term:`words ` within frames. A segment of a logic
+ column is 36 frames wide and 2 words high.
- slice
- Portion of a :term:`CLB` tile that contains :term:`BELs `.
+ Site
+ Portion of a tile where :term:`BELs ` can be placed. The
+ :term:`slices ` in a :term:`CLB` tile are sites.
- tile
+ Slice
+ Portion of a :term:`tile` tile that contains :term:`BELs `.
+ A `CLBLL_L/CLBLL_R` tile contains two `SLICEL` slices.
+ A `CLBLM_L/CLBLM_R` tile contains one `SLICEL` slice and one `SLICEM` slice.
+
+ Specimen
+ A :term:`bitstream` of a (usually auto-generated) design with additional
+ files containing information about the placed and routed design.
+ These additional files are usually generated using Vivado TCL scripts
+ querying the Vivado design database.
+
+ Tile
Fundamental unit of physical structure containing a single type of
- resource or function.
+ resource or function. A container for :term:`sites ` and
+ :term:`slices `. The whole chip is a grid of tiles.
- wire
+ The most important tile types are left and right interconnect tiles
+ (`INT_L` and `INT_R`) and left and right :term:`CLB` logic/memory tiles
+ (`CLBLL_L`, `CLBLL_R`, `CLBLM_L`, `CLBLM_R`).
+
+ Wire
Physical wire within a :term:`tile`.
- word
- 32-bits stored in big-endian order. Fundamental unit of :term:`bitstream` format.
+ Word
+ 32 bits stored in big-endian order. Fundamental unit of :term:`bitstream`
+ format.