diff --git a/doc/javascripts/upload.js b/doc/javascripts/upload.js
index 8f6cba2..97ea5e6 100644
--- a/doc/javascripts/upload.js
+++ b/doc/javascripts/upload.js
@@ -1,24 +1,42 @@
 let data;
 let fileUploaded = false;
 
+// Map the fake upload button to the real (hidden) upload button
+document.addEventListener("DOMContentLoaded", function() {
+    const uploadButton = document.getElementById("uploadButton");
+    const fileInput = document.getElementById("fileInput");
+    const filePathDisplay = document.getElementById("filePath");
+
+    uploadButton.addEventListener("click", function() {
+        fileInput.click();
+    });
+
+    fileInput.addEventListener("change", function() {
+        const filePath = fileInput.value; // Get the file path from the file input
+        filePathDisplay.textContent = "Loaded " + filePath; // Display the file path
+    });
+});
+
+// Update fileUploaded flag when a file gets uploaded
 document.getElementById('fileInput').addEventListener('change', function(event) {
     const file = event.target.files[0];
     const reader = new FileReader();
     reader.onload = function(e) {
         data = e.target.result;
-        fileUploaded = true; // Set the flag to indicate file upload completion
+        fileUploaded = true;
     };
     reader.readAsText(file);
 });
 
+// Continuously poll to see if the file has been uploaded
 function runAfterUpload() {
     if (!fileUploaded) {
         setTimeout(runAfterUpload, 100); // Check again after 100ms
         return;
     }
 
-    // Your additional JavaScript code to run after file upload
-    WebTerminal(data);
+    // Additional JavaScript code to run after file upload
+    // WebTerminal(data);
 }
 
-runAfterUpload(); // Start checking for file upload completion
\ No newline at end of file
+runAfterUpload();
\ No newline at end of file
diff --git a/doc/javascripts/webTerminal.js b/doc/javascripts/webTerminal.js
index 17cb7db..84201f0 100644
--- a/doc/javascripts/webTerminal.js
+++ b/doc/javascripts/webTerminal.js
@@ -1,4 +1,5 @@
 document.getElementById('connectButton').addEventListener('click', selectPort);
+document.getElementById('runButton').addEventListener('click', webTerminal);
 
 async function selectPort(){
     await navigator.serial.requestPort();
@@ -19,11 +20,11 @@ serialWorker.onmessage = (e) => {
 };
 
 // Main function for the Web Terminal
-async function WebTerminal(data){
+async function webTerminal(){
     let pyodide = await loadPyodide();
 
     // Load Manta.yaml into pyodide's file system
-    pyodide.FS.writeFile("/manta.yaml", data, { encoding: "utf8" });
+    // pyodide.FS.writeFile("/manta.yaml", data, { encoding: "utf8" });
 
     // Load micropip, setuptools, manta
     await pyodide.loadPackage("micropip");
diff --git a/doc/web_terminal.md b/doc/web_terminal.md
index dd6a9eb..161f461 100644
--- a/doc/web_terminal.md
+++ b/doc/web_terminal.md
@@ -1,5 +1,3 @@
-
-
 ## Open Serial Port
 <button class="md-button" id="connectButton">Connect</button>
 
@@ -8,29 +6,15 @@
 <input type="file" id="fileInput" accept=".yaml,.yml" style="display: none">
 <div id="filePath"></div>
 
+## Run Main Thread
+<button class="md-button" id="runButton">Run!</button>
+
 
 <!-- Load Javascript -->
 <script src="../javascripts/webTerminal.js"></script>
 <script src="../javascripts/serial.js"></script>
-<script src="../javascripts/upload.js"></script>
+<!-- <script src="../javascripts/upload.js"></script> -->
 <script src="https://cdn.jsdelivr.net/pyodide/v0.25.1/full/pyodide.js"></script>
 
-<script>
-document.addEventListener("DOMContentLoaded", function() {
-    const uploadButton = document.getElementById("uploadButton");
-    const fileInput = document.getElementById("fileInput");
-    const filePathDisplay = document.getElementById("filePath");
 
-    uploadButton.addEventListener("click", function() {
-        fileInput.click();
-    });
-
-    fileInput.addEventListener("change", function() {
-        const filePath = fileInput.value; // Get the file path from the file input
-        filePathDisplay.textContent = "Loaded " + filePath; // Display the file path
-    });
-});
-
-</script>
-
-<!-- <iframe src="https://app.surfer-project.org/?load_url=https://app.surfer-project.org/picorv32.vcd&amp;startup_commands=show_quick_start;module_add%20testbench.top;toggle_menu" ,="" style="width: 100%; height: 100%"></iframe> -->
\ No newline at end of file
+<!-- <iframe src="https://app.surfer-project.org/?load_url=https://app.surfer-project.org/picorv32.vcd&amp;startup_commands=show_quick_start;module_add%20testbench.top;toggle_menu" ,="" style="width: 100%; height: 500px"></iframe> -->
\ No newline at end of file